| Time | Title | Speaker | Resources |
|—————|———————————————————————————————————————————————–|————————————|————————————————————————————————————————————————————|
| 8:45 - 9:30 | Minibus/Taxis to pick attendees up from hotels and bring to Campus |
| 9:30 - 10:00 | Coffee is served outside the training room |
||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 11:10 | DAS - Technical Introduction | Andy Jenkinson | Powerpoint 2008
Powerpoint 1997
PDF |
| 11:10 - 11:30 | The DAS Registration Service | Jonathan Warren | The Registry |
| 11:30 - 12:15 | Putting it all together | Rob Finn | Powerpoint
PDF |
| 12:15 - 13:15 | Lunch break |
| 13:15 - 15:10 | Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. | Jonathan Warren and Andy Jenkinson | Java server: Dazzle tutorial
Java client: Dasobert tutorial
Perl server: Bio::Das::ProServer tutorial
Perl client: Bio::Das::Lite tutorial |
| 15:10 - 15:30 | Coffee break |
| 15:30 - 16:30 | Hands On Tutorial - continued |
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | presentation |
| 10:20 | Collaborative Annotation tool (MaDAS) | Victor de la Torre | presentation |
| 10:40 | Jalview / VAMSAS | Jim Procter / Geoff Barton | presentation |
| 11:00 | Pfam | Rob Finn | presentation |
| 11:20 | DASgenexp | Bernat Gel | presentation |
| 11:40 | Dasty2 | Rafael Jimenez | presentation |
| 12:00 | EMBOSS as an efficient DAS annotation source | Peter Rice, Mahmut Uludag | presentation |
| 12:15-13:30 | Lunch break | ||
| 13:30 | Ensembl | James Smith | presentation |
| 13:50 | Integration of info on gene expression and its temporal and spatial localization | Jose Ramon Macias | presentation |
| 14:10 | DAS - writeback | Gustavo Salazar | presentation |
| 14:30 | Interaction DAS | Hagen Blankenburg | presentation |
| 14:50 | DAS for ENCODE data coordination | Felix Kokocinski | |
| 15:10-15:30 | coffee break | ||
| 15:30 | A web resource for selecting epitopes for antibodies | Niall Haslam | presentation |
| 15:50 | DAS Searches | Andreas Prlic | presentation |
| 16:10 | A karyotype DAS client | Rafael Jimenez | presentation |
| 16:30 | DASher, a standalone Java client for DAS protein sequence features | David Messina | presentation pdf |
| 16:50 | Data Federation - BioMart & DAS | Syed Haider | presentation |
| 17:10 | Trellis DAS2 framework- which includes the DAS1–>DAS2 proxy and alpha UCSC DAS2 server | Gregg Helt | presentation |
| 17:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | ||